Publications

The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes

Published in Front. Plant Sci., 2020

Recommended citation: Raksha Singh, Rohana Liyanage, Chirag Gupta, Jackson O. Lay Jr., Andy Pereira and Clemencia M. Rojas (2020). " The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes." Front. Plant Sci.. https://www.frontiersin.org/articles/10.3389/fpls.2020.00232/full

The FATTY ACID DESATURASE2 family in tomato contributes to primary metabolism and stress responses

Published in Plant Physiology, 2020

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Recommended citation: Min Woo Lee, Carmen S. Padilla, Chirag Gupta, Aravind Galla, Andy Pereira, Jiamei Li, Fiona L. Goggin. (2020). "The FATTY ACID DESATURASE2 Family in Tomato Contributes to Primary Metabolism and Stress Responses." Plant Physiology. 182(2). http://www.plantphysiol.org/content/182/2/1083.abstract

Recent advances in gene function prediction using context-specific coexpression networks in plants

Published in F1000 Research, 2019

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Recommended citation: Chirag Gupta and Andy Pereira. (2019). "Recent advances in gene function prediction using context-specific coexpression networks in plants." F1000 Research. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364378/

SANe: The Seed Active Network for Discovering Transcriptional Regulatory Programs of Seed Development

Published in biorxiv, 2018

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Recommended citation: Chirag Gupta, Arjun Krishnan, Andrew Schneider, Cynthia Denbow, Eva Collakova, Pawel Wolinski, Andy Pereira. (2018). "SANe: The Seed Active Network for Discovering Transcriptional Regulatory Programs of Seed Development." biorxiv.. https://www.biorxiv.org/content/10.1101/165894v2

Transcriptome-based Gene Networks for Systems-level Analysis of Plant Gene Functions

Published in University of Arkansas, 2017

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Recommended citation: Chirag Gupta (2017). "Transcriptome-based Gene Networks for Systems-level Analysis of Plant Gene Functions." University of Arkansas. https://scholarworks.uark.edu/etd/2526/

RECoN: rice environment coexpression network for systems level analysis of abiotic-stress response

Published in Frontiers in Plant Science, 2017

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Recommended citation: A Krishnan, C Gupta, MMR Ambavaram, A Pereira. (2017). "RECoN: rice environment coexpression network for systems level analysis of abiotic-stress response." Front. in Plant Sci.. https://www.frontiersin.org/articles/10.3389/fpls.2017.01640/full

GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana

Published in Scientific Reports, 2017

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Recommended citation: Venkategowda Ramegowda, Upinder Singh Gill, Palaiyur Nanjappan Sivalingam, Aarti Gupta, Chirag Gupta, Geetha Govind, Karaba N Nataraja, Andy Pereira, Makarla Udayakumar, Kirankumar S Mysore, Muthappa Senthil-Kumar. (2017). "GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana." Scientific Reports.. https://www.nature.com/articles/s41598-017-09542-1

Genetic Basis of Altered Grain Quality in Different Rice Cultivars Under High Nighttime Temperature

Published in B.R. Wells Arkansas Rice Research Studies, 2016

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Recommended citation: Venkategowda Ramegowda, Subodh Srivastava, Julie Thomas, Chirag Gupta, Supratim Basu, Paul Counce, Ya-Jane Wang, Terry Siebenmorgen, Karen Moldenhauer, Andy Pereira. (2016). "Genetic Basis of Altered Grain Quality in Different Rice Cultivars Under High Nighttime Temperature." B.R. Wells Arkansas Rice Research Studies. https://scholarworks.uark.edu/cgi/viewcontent.cgi?article=1019&context=aaesser

Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK

Published in Plant signaling & behavior, 2015

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Recommended citation: Venkategowda Ramegowda, Supratim Basu, Chirag Gupta, Andy Pereira. (2015). "Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK." Plant signaling & behavior.. https://www.tandfonline.com/doi/full/10.1080/15592324.2015.1034421