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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
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Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK
Published in Plant signaling & behavior, 2015
Recommended citation: Venkategowda Ramegowda, Supratim Basu, Chirag Gupta, Andy Pereira. (2015). "Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK." Plant signaling & behavior.. https://www.tandfonline.com/doi/full/10.1080/15592324.2015.1034421
Genetic Basis of Altered Grain Quality in Different Rice Cultivars Under High Nighttime Temperature
Published in B.R. Wells Arkansas Rice Research Studies, 2016
Recommended citation: Venkategowda Ramegowda, Subodh Srivastava, Julie Thomas, Chirag Gupta, Supratim Basu, Paul Counce, Ya-Jane Wang, Terry Siebenmorgen, Karen Moldenhauer, Andy Pereira. (2016). "Genetic Basis of Altered Grain Quality in Different Rice Cultivars Under High Nighttime Temperature." B.R. Wells Arkansas Rice Research Studies. https://scholarworks.uark.edu/cgi/viewcontent.cgi?article=1019&context=aaesser
GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana
Published in Scientific Reports, 2017
Recommended citation: Venkategowda Ramegowda, Upinder Singh Gill, Palaiyur Nanjappan Sivalingam, Aarti Gupta, Chirag Gupta, Geetha Govind, Karaba N Nataraja, Andy Pereira, Makarla Udayakumar, Kirankumar S Mysore, Muthappa Senthil-Kumar. (2017). "GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana." Scientific Reports.. https://www.nature.com/articles/s41598-017-09542-1
RECoN: rice environment coexpression network for systems level analysis of abiotic-stress response
Published in Frontiers in Plant Science, 2017
Recommended citation: A Krishnan, C Gupta, MMR Ambavaram, A Pereira. (2017). "RECoN: rice environment coexpression network for systems level analysis of abiotic-stress response." Front. in Plant Sci.. https://www.frontiersin.org/articles/10.3389/fpls.2017.01640/full
Transcriptome-based Gene Networks for Systems-level Analysis of Plant Gene Functions
Published in University of Arkansas, 2017
Recommended citation: Chirag Gupta (2017). "Transcriptome-based Gene Networks for Systems-level Analysis of Plant Gene Functions." University of Arkansas. https://scholarworks.uark.edu/etd/2526/
SANe: The Seed Active Network for Discovering Transcriptional Regulatory Programs of Seed Development
Published in biorxiv, 2018
Recommended citation: Chirag Gupta, Arjun Krishnan, Andrew Schneider, Cynthia Denbow, Eva Collakova, Pawel Wolinski, Andy Pereira. (2018). "SANe: The Seed Active Network for Discovering Transcriptional Regulatory Programs of Seed Development." biorxiv.. https://www.biorxiv.org/content/10.1101/165894v2
Recent advances in gene function prediction using context-specific coexpression networks in plants
Published in F1000 Research, 2019
Recommended citation: Chirag Gupta and Andy Pereira. (2019). "Recent advances in gene function prediction using context-specific coexpression networks in plants." F1000 Research. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364378/
The FATTY ACID DESATURASE2 family in tomato contributes to primary metabolism and stress responses
Published in Plant Physiology, 2020
Recommended citation: Min Woo Lee, Carmen S. Padilla, Chirag Gupta, Aravind Galla, Andy Pereira, Jiamei Li, Fiona L. Goggin. (2020). "The FATTY ACID DESATURASE2 Family in Tomato Contributes to Primary Metabolism and Stress Responses." Plant Physiology. 182(2). http://www.plantphysiol.org/content/182/2/1083.abstract
The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes
Published in Front. Plant Sci., 2020
Recommended citation: Raksha Singh, Rohana Liyanage, Chirag Gupta, Jackson O. Lay Jr., Andy Pereira and Clemencia M. Rojas (2020). " The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes." Front. Plant Sci.. https://www.frontiersin.org/articles/10.3389/fpls.2020.00232/full
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Guide to analysis of RNA-seq data
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Workflow to analyze RNA-seq data when a reference genome is available.